IL_4U1V_279

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4U1V|1|DA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_279 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.1074

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4U1V|1|DA|G|1031
4U1V|1|DA|A|1032
4U1V|1|DA|U|1033
4U1V|1|DA|G|1034
*
4U1V|1|DA|C|1121
4U1V|1|DA|G|1122
4U1V|1|DA|C|1123

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DM

50S ribosomal protein L16