IL_4U1V_343

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

4U1V|1|DA|U|2689, 4U1V|1|DA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_343 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0948

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4U1V|1|DA|U|2687
4U1V|1|DA|G|2688
4U1V|1|DA|U|2689
4U1V|1|DA|U|2690
4U1V|1|DA|C|2691
*
4U1V|1|DA|G|2718
4U1V|1|DA|G|2719
4U1V|1|DA|U|2720
4U1V|1|DA|A|2721
4U1V|1|DA|G|2722

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DN

50S ribosomal protein L17

Chain DP

50S ribosomal protein L19