IL_4U24_225

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

4U24|1|CA|A|1257, 4U24|1|CA|A|1280, 4U24|1|CA|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U24_225 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.199

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4U24|1|CA|G|1255
4U24|1|CA|A|1256
4U24|1|CA|A|1257
4U24|1|CA|G|1258
*
4U24|1|CA|C|1277
4U24|1|CA|G|1278
4U24|1|CA|G|1279
4U24|1|CA|A|1280
4U24|1|CA|C|1281
4U24|1|CA|C|1282

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14