IL_4U24_267

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4U24|1|DA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U24_267 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.0965

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4U24|1|DA|C|994
4U24|1|DA|C|995
4U24|1|DA|A|996
*
4U24|1|DA|U|1159
4U24|1|DA|G|1160

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21

Chain DZ

50S ribosomal protein L30