IL_4U25_026

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4U25|1|AA|A|532, 4U25|1|AA|U|534, 4U25|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_026 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1443

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4U25|1|AA|G|515
4U25|1|AA|U|516
4U25|1|AA|G|517
4U25|1|AA|C|518
4U25|1|AA|C|519
4U25|1|AA|A|520
4U25|1|AA|G|521
*
4U25|1|AA|C|528
4U25|1|AA|G|529
4U25|1|AA|G|530
4U25|1|AA|U|531
4U25|1|AA|A|532
4U25|1|AA|A|533
4U25|1|AA|U|534
4U25|1|AA|A|535
4U25|1|AA|C|536

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12