IL_4U25_063
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U25_063 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.0802
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U25|1|AA|A|1430
4U25|1|AA|A|1431
4U25|1|AA|G|1432
4U25|1|AA|A|1433
4U25|1|AA|A|1434
4U25|1|AA|G|1435
*
4U25|1|AA|C|1466
4U25|1|AA|C|1467
4U25|1|AA|A|1468
4U25|1|AA|C|1469
4U25|1|AA|U|1470
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AT
- 30S ribosomal protein S20
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BK
- 50S ribosomal protein L14
- Chain BP
- 50S ribosomal protein L19
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