IL_4U25_128

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_128 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2328

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

4U25|1|BA|U|1720
4U25|1|BA|G|1721
4U25|1|BA|A|1722
4U25|1|BA|G|1723
4U25|1|BA|G|1724
4U25|1|BA|U|1725
*
4U25|1|BA|A|1735
4U25|1|BA|U|1736
4U25|1|BA|G|1737
4U25|1|BA|G|1738
4U25|1|BA|A|1739
4U25|1|BA|G|1740

Current chains

Chain BA

23S rRNA

Nearby chains