IL_4U26_269

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGGG*CUUACC

Length

11 nucleotides

Bulged bases

4U26|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U26_269 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3713

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4U26|1|DA|G|879
4U26|1|DA|G|880
4U26|1|DA|G|881
4U26|1|DA|G|882
4U26|1|DA|G|883
*
4U26|1|DA|C|893
4U26|1|DA|U|894
4U26|1|DA|U|895
4U26|1|DA|A|896
4U26|1|DA|C|897
4U26|1|DA|C|898

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16