IL_4U26_391

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUUCA*UGAGAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U26_391 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.359

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4U26|1|AA|U|1007
4U26|1|AA|U|1008
4U26|1|AA|U|1009
4U26|1|AA|U|1010
4U26|1|AA|C|1011
4U26|1|AA|A|1012
*
4U26|1|AA|U|1017
4U26|1|AA|G|1018
4U26|1|AA|A|1019
4U26|1|AA|G|1020
4U26|1|AA|A|1021
4U26|1|AA|A|1022

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14

Chain AS

30S ribosomal protein S19