IL_4U3M_074

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3M_074 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.0415

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4U3M|1|1|A|1883
4U3M|1|1|A|1884
4U3M|1|1|U|1885
4U3M|1|1|A|1886
4U3M|1|1|A|1887
4U3M|1|1|U|1888
4U3M|1|1|G|1889
*
4U3M|1|1|C|2346
4U3M|1|1|U|2347
4U3M|1|1|A|2348
4U3M|1|1|U|2349

Current chains

Chain 1

25s rRNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain M7

60S ribosomal protein L17-A

Chain O1

60S ribosomal protein L31-A