3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGUC*GGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_176 not in the Motif Atlas
Homologous match to IL_4V88_430
Geometric discrepancy: 0.0865
The information below is about IL_4V88_430
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

4U3M|1|2|G|871
4U3M|1|2|G|872
4U3M|1|2|U|873
4U3M|1|2|C|874
*
4U3M|1|2|G|953
4U3M|1|2|G|954
4U3M|1|2|A|955
4U3M|1|2|C|956

Current chains

Chain 2
18S rRNA

Nearby chains

Chain C3
40S ribosomal protein S13
Chain D7
40S ribosomal protein S27-A
Chain S1
40S ribosomal protein S1-A

Coloring options:


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