3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAAUGUAG*UAUUAUAGC
Length
17 nucleotides
Bulged bases
4U3M|1|5|U|534, 4U3M|1|5|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_251 not in the Motif Atlas
Homologous match to IL_5TBW_020
Geometric discrepancy: 0.0761
The information below is about IL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07703.1
Basepair signature
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4U3M|1|5|G|531
4U3M|1|5|A|532
4U3M|1|5|A|533
4U3M|1|5|U|534
4U3M|1|5|G|535
4U3M|1|5|U|536
4U3M|1|5|A|537
4U3M|1|5|G|538
*
4U3M|1|5|U|553
4U3M|1|5|A|554
4U3M|1|5|U|555
4U3M|1|5|U|556
4U3M|1|5|A|557
4U3M|1|5|U|558
4U3M|1|5|A|559
4U3M|1|5|G|560
4U3M|1|5|C|561

Current chains

Chain 5
25s rRNA

Nearby chains

Chain m4
60S ribosomal protein L14-A
Chain n0
60S ribosomal protein L20-A
Chain p0
60S acidic ribosomal protein P0

Coloring options:


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