3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAAAG*CUAGUAGC
Length
13 nucleotides
Bulged bases
4U3M|1|5|A|933, 4U3M|1|5|G|937
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_259 not in the Motif Atlas
Homologous match to IL_5TBW_028
Geometric discrepancy: 0.0517
The information below is about IL_5TBW_028
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_17470.7
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

4U3M|1|5|G|805
4U3M|1|5|A|806
4U3M|1|5|A|807
4U3M|1|5|A|808
4U3M|1|5|G|809
*
4U3M|1|5|C|931
4U3M|1|5|U|932
4U3M|1|5|A|933
4U3M|1|5|G|934
4U3M|1|5|U|935
4U3M|1|5|A|936
4U3M|1|5|G|937
4U3M|1|5|C|938

Current chains

Chain 5
25s rRNA

Nearby chains

Chain l4
60S ribosomal protein L4-A
Chain m3
60S ribosomal protein L13-A
Chain m5
60S ribosomal protein L15-A
Chain n8
60S ribosomal protein L28
Chain o7
60S ribosomal protein L37-A

Coloring options:


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