3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUAUCA*UCUUAUG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_304 not in the Motif Atlas
Homologous match to IL_8C3A_078
Geometric discrepancy: 0.0769
The information below is about IL_8C3A_078
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_39753.2
Basepair signature
cWW-L-R-tWH-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

4U3M|1|5|U|1702
4U3M|1|5|U|1703
4U3M|1|5|A|1704
4U3M|1|5|U|1705
4U3M|1|5|C|1706
4U3M|1|5|A|1707
*
4U3M|1|5|U|1737
4U3M|1|5|C|1738
4U3M|1|5|U|1739
4U3M|1|5|U|1740
4U3M|1|5|A|1741
4U3M|1|5|U|1742
4U3M|1|5|G|1743

Current chains

Chain 5
25s rRNA

Nearby chains

Chain o4
60S ribosomal protein L34-A

Coloring options:


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