IL_8C3A_078

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8C3A|1|1|U|1698
8C3A|1|1|U|1699
8C3A|1|1|A|1700
8C3A|1|1|U|1701
8C3A|1|1|C|1702
8C3A|1|1|A|1703
*
8C3A|1|1|U|1733
8C3A|1|1|C|1734
8C3A|1|1|U|1735
8C3A|1|1|U|1736
8C3A|1|1|A|1737
8C3A|1|1|U|1738
8C3A|1|1|G|1739

Current chains

Chain 1

25S

Nearby chains

Chain AH

60S ribosomal protein L34-B

Chain AQ

60S ribosomal protein L43-A