3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UCGU*AA
Length
6 nucleotides
Bulged bases
4U3M|1|6|C|114, 4U3M|1|6|G|115
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_374 not in the Motif Atlas
Homologous match to IL_4V88_392
Geometric discrepancy: 0.0645
The information below is about IL_4V88_392
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

4U3M|1|6|U|113
4U3M|1|6|C|114
4U3M|1|6|G|115
4U3M|1|6|U|116
*
4U3M|1|6|A|300
4U3M|1|6|A|301

Current chains

Chain 6
18S rRNA

Nearby chains

Chain c1
40S ribosomal protein S11-A
Chain s4
40S ribosomal protein S4-A
Chain s8
40S ribosomal protein S8-A

Coloring options:


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