3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UAUCAA*UUUCAACG
Length
14 nucleotides
Bulged bases
4U3M|1|6|U|313, 4U3M|1|6|C|351
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_385 not in the Motif Atlas
Homologous match to IL_4V88_402
Geometric discrepancy: 0.0391
The information below is about IL_4V88_402
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

4U3M|1|6|U|311
4U3M|1|6|A|312
4U3M|1|6|U|313
4U3M|1|6|C|314
4U3M|1|6|A|315
4U3M|1|6|A|316
*
4U3M|1|6|U|348
4U3M|1|6|U|349
4U3M|1|6|U|350
4U3M|1|6|C|351
4U3M|1|6|A|352
4U3M|1|6|A|353
4U3M|1|6|C|354
4U3M|1|6|G|355

Current chains

Chain 6
18S rRNA

Nearby chains

Chain c1
40S ribosomal protein S11-A
Chain d3
40S ribosomal protein S23-A
Chain s8
40S ribosomal protein S8-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.181 s