IL_4U3N_134

3D structure

PDB id

4U3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCC*GUUGU

Length

8 nucleotides

Bulged bases

4U3N|1|1|U|3354, 4U3N|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3N_134 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.2506

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4U3N|1|1|G|3348
4U3N|1|1|C|3349
4U3N|1|1|C|3350
*
4U3N|1|1|G|3353
4U3N|1|1|U|3354
4U3N|1|1|U|3355
4U3N|1|1|G|3356
4U3N|1|1|U|3357

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N2

60S ribosomal protein L22-A

Chain S8

40S ribosomal protein S8-A