IL_4U4O_070
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGGAAUUG*CGGAGAUG
- Length
- 16 nucleotides
- Bulged bases
- 4U4O|1|1|U|1716, 4U4O|1|1|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4O_070 not in the Motif Atlas
- Geometric match to IL_3U4M_004
- Geometric discrepancy: 0.3503
- The information below is about IL_3U4M_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
4U4O|1|1|C|1711
4U4O|1|1|G|1712
4U4O|1|1|G|1713
4U4O|1|1|A|1714
4U4O|1|1|A|1715
4U4O|1|1|U|1716
4U4O|1|1|U|1717
4U4O|1|1|G|1718
*
4U4O|1|1|C|1726
4U4O|1|1|G|1727
4U4O|1|1|G|1728
4U4O|1|1|A|1729
4U4O|1|1|G|1730
4U4O|1|1|A|1731
4U4O|1|1|U|1732
4U4O|1|1|G|1733
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C3
- 40S ribosomal protein S13
- Chain M9
- 60S ribosomal protein L19-A
- Chain N7
- 60S ribosomal protein L27-A
- Chain O0
- 60S ribosomal protein L30
- Chain O4
- 60S ribosomal protein L34-A
- Chain Q3
- 60S ribosomal protein L43-A
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