IL_4U4O_184

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4O_184 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2388

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4U4O|1|2|C|1173
4U4O|1|2|C|1174
4U4O|1|2|U|1175
4U4O|1|2|G|1176
*
4U4O|1|2|C|1463
4U4O|1|2|G|1464
4U4O|1|2|C|1465
4U4O|1|2|G|1466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A

Chain D0

40S ribosomal protein S20

Chain SM

Suppressor protein STM1