IL_4U4O_210

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUAG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4O_210 not in the Motif Atlas

Geometric match to IL_4WF9_084

Geometric discrepancy: 0.3624

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4U4O|1|2|C|1664
4U4O|1|2|U|1665
4U4O|1|2|U|1666
4U4O|1|2|A|1667
4U4O|1|2|G|1668
*
4U4O|1|2|C|1733
4U4O|1|2|U|1734
4U4O|1|2|U|1735
4U4O|1|2|G|1736
4U4O|1|2|G|1737

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain N3

60S ribosomal protein L23-A

Chain S8

40S ribosomal protein S8-A