IL_4U4O_533
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4O_533 not in the Motif Atlas
- Homologous match to IL_8P9A_421
- Geometric discrepancy: 0.1437
- The information below is about IL_8P9A_421
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4U4O|1|2|G|885
4U4O|1|2|U|886
4U4O|1|2|A|887
4U4O|1|2|U|888
*
4U4O|1|2|A|924
4U4O|1|2|G|925
4U4O|1|2|A|926
4U4O|1|2|C|927
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C4
- 40S ribosomal protein S14-A
- Chain D6
- 40S ribosomal protein S26-B
- Chain L2
- 60S ribosomal protein L2-A
- Chain S1
- 40S ribosomal protein S1-A
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