IL_8P9A_421

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8P9A|1|sR|G|885
8P9A|1|sR|U|886
8P9A|1|sR|A|887
8P9A|1|sR|U|888
*
8P9A|1|sR|A|924
8P9A|1|sR|G|925
8P9A|1|sR|A|926
8P9A|1|sR|C|927

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DR

60S ribosomal protein L43-A

Chain c4

40S ribosomal protein S14-B

Chain d6

Small ribosomal subunit protein eS26B

Chain s1

40S ribosomal protein S1-A