IL_4U4R_155

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

4U4R|1|2|U|313, 4U4R|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4R_155 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0486

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

4U4R|1|2|U|311
4U4R|1|2|A|312
4U4R|1|2|U|313
4U4R|1|2|C|314
4U4R|1|2|A|315
4U4R|1|2|A|316
*
4U4R|1|2|U|348
4U4R|1|2|U|349
4U4R|1|2|U|350
4U4R|1|2|C|351
4U4R|1|2|A|352
4U4R|1|2|A|353
4U4R|1|2|C|354
4U4R|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain D3

40S ribosomal protein S23-A

Chain S8

40S ribosomal protein S8-A