3D structure

PDB id
4U4R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Lactimidomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GUGCCAG*CGGUAAUUC
Length
16 nucleotides
Bulged bases
4U4R|1|6|A|579, 4U4R|1|6|U|581, 4U4R|1|6|U|582
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U4R_399 not in the Motif Atlas
Homologous match to IL_4V88_415
Geometric discrepancy: 0.054
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4U4R|1|6|G|562
4U4R|1|6|U|563
4U4R|1|6|G|564
4U4R|1|6|C|565
4U4R|1|6|C|566
4U4R|1|6|A|567
4U4R|1|6|G|568
*
4U4R|1|6|C|575
4U4R|1|6|G|576
4U4R|1|6|G|577
4U4R|1|6|U|578
4U4R|1|6|A|579
4U4R|1|6|A|580
4U4R|1|6|U|581
4U4R|1|6|U|582
4U4R|1|6|C|583

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain d3
40S ribosomal protein S23-A
Chain e0
40S ribosomal protein S30-A
Chain s3
40S ribosomal protein S3

Coloring options:


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