IL_4U4R_471

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

4U4R|1|1|U|1820, 4U4R|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4R_471 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.4066

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4U4R|1|1|G|1623
4U4R|1|1|G|1624
4U4R|1|1|A|1625
*
4U4R|1|1|U|1818
4U4R|1|1|U|1819
4U4R|1|1|U|1820
4U4R|1|1|U|1821
4U4R|1|1|C|1822

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain O4

60S ribosomal protein L34-A