IL_8C3A_071

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

8C3A|1|1|U|1816, 8C3A|1|1|U|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8C3A|1|1|G|1619
8C3A|1|1|G|1620
8C3A|1|1|A|1621
*
8C3A|1|1|U|1814
8C3A|1|1|U|1815
8C3A|1|1|U|1816
8C3A|1|1|U|1817
8C3A|1|1|C|1818

Current chains

Chain 1

25S

Nearby chains

Chain AH

60S ribosomal protein L34-B

Chain AL

60S ribosomal protein L38