IL_4U4U_166

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

4U4U|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4U_166 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.0729

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

4U4U|1|2|G|616
4U4U|1|2|U|617
4U4U|1|2|U|618
4U4U|1|2|A|619
4U4U|1|2|A|620
4U4U|1|2|A|621
4U4U|1|2|A|622
*
4U4U|1|2|U|1104
4U4U|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain D6

40S ribosomal protein S26-B