IL_4U4U_190
3D structure
- PDB id
- 4U4U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lycorine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CACCA*UCCCUG
- Length
- 11 nucleotides
- Bulged bases
- 4U4U|1|2|C|1158, 4U4U|1|2|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4U_190 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3638
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4U4U|1|2|C|1156
4U4U|1|2|A|1157
4U4U|1|2|C|1158
4U4U|1|2|C|1159
4U4U|1|2|A|1160
*
4U4U|1|2|U|1617
4U4U|1|2|C|1618
4U4U|1|2|C|1619
4U4U|1|2|C|1620
4U4U|1|2|U|1621
4U4U|1|2|G|1622
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain D0
- 40S ribosomal protein S20
- Chain D8
- 40S ribosomal protein S28-A
- Chain S5
- 40S ribosomal protein S5
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