IL_4U4U_284
3D structure
- PDB id
- 4U4U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lycorine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 4U4U|1|5|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4U_284 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.1934
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
4U4U|1|5|U|1218
4U4U|1|5|C|1219
4U4U|1|5|U|1220
4U4U|1|5|A|1221
4U4U|1|5|G|1222
4U4U|1|5|A|1223
4U4U|1|5|C|1224
4U4U|1|5|A|1225
4U4U|1|5|G|1226
*
4U4U|1|5|C|1283
4U4U|1|5|C|1284
4U4U|1|5|G|1285
4U4U|1|5|A|1286
4U4U|1|5|A|1287
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain n0
- 60S ribosomal protein L20-A
- Chain p0
- 60S acidic ribosomal protein P0
Coloring options: