IL_4U4Z_393
3D structure
- PDB id
- 4U4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Phyllanthoside bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 4U4Z|1|6|A|579, 4U4Z|1|6|U|581, 4U4Z|1|6|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4Z_393 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.0679
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4U4Z|1|6|G|562
4U4Z|1|6|U|563
4U4Z|1|6|G|564
4U4Z|1|6|C|565
4U4Z|1|6|C|566
4U4Z|1|6|A|567
4U4Z|1|6|G|568
*
4U4Z|1|6|C|575
4U4Z|1|6|G|576
4U4Z|1|6|G|577
4U4Z|1|6|U|578
4U4Z|1|6|A|579
4U4Z|1|6|A|580
4U4Z|1|6|U|581
4U4Z|1|6|U|582
4U4Z|1|6|C|583
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d3
- 40S ribosomal protein S23-A
- Chain e0
- 40S ribosomal protein S30-A
- Chain s3
- 40S ribosomal protein S3
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