3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUUAGUAC*GGAACAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_115 not in the Motif Atlas
Homologous match to IL_5TBW_116
Geometric discrepancy: 0.0492
The information below is about IL_5TBW_116
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4U50|1|1|C|3018
4U50|1|1|U|3019
4U50|1|1|U|3020
4U50|1|1|A|3021
4U50|1|1|G|3022
4U50|1|1|U|3023
4U50|1|1|A|3024
4U50|1|1|C|3025
*
4U50|1|1|G|3030
4U50|1|1|G|3031
4U50|1|1|A|3032
4U50|1|1|A|3033
4U50|1|1|C|3034
4U50|1|1|A|3035
4U50|1|1|G|3036

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L3
60S ribosomal protein L3
Chain L9
60S ribosomal protein L9-A
Chain N3
60S ribosomal protein L23-A
Chain Q0
Ubiquitin-60S ribosomal protein L40

Coloring options:


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