3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGA*UUUUC
Length
8 nucleotides
Bulged bases
4U50|1|1|U|1820, 4U50|1|1|U|1821
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_465 not in the Motif Atlas
Homologous match to IL_8C3A_071
Geometric discrepancy: 0.4253
The information below is about IL_8C3A_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_43275.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
30

Unit IDs

4U50|1|1|G|1623
4U50|1|1|G|1624
4U50|1|1|A|1625
*
4U50|1|1|U|1818
4U50|1|1|U|1819
4U50|1|1|U|1820
4U50|1|1|U|1821
4U50|1|1|C|1822

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain O4
60S ribosomal protein L34-A

Coloring options:


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