IL_4U52_299

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

4U52|1|5|U|1820, 4U52|1|5|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U52_299 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.2475

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4U52|1|5|G|1623
4U52|1|5|G|1624
4U52|1|5|A|1625
*
4U52|1|5|U|1818
4U52|1|5|U|1819
4U52|1|5|U|1820
4U52|1|5|U|1821
4U52|1|5|C|1822

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o4

60S ribosomal protein L34-A

Chain o8

60S ribosomal protein L38