IL_4U52_306
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUAUCA*UCUUAUG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U52_306 not in the Motif Atlas
- Homologous match to IL_8C3A_078
- Geometric discrepancy: 0.0866
- The information below is about IL_8C3A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39753.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U52|1|5|U|1702
4U52|1|5|U|1703
4U52|1|5|A|1704
4U52|1|5|U|1705
4U52|1|5|C|1706
4U52|1|5|A|1707
*
4U52|1|5|U|1737
4U52|1|5|C|1738
4U52|1|5|U|1739
4U52|1|5|U|1740
4U52|1|5|A|1741
4U52|1|5|U|1742
4U52|1|5|G|1743
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain o4
- 60S ribosomal protein L34-A
- Chain q3
- 60S ribosomal protein L43-A
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