IL_4U52_373
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UAUAAGC*GUGAAA
- Length
- 13 nucleotides
- Bulged bases
- 4U52|1|6|U|66, 4U52|1|6|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U52_373 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.3556
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U52|1|6|U|64
4U52|1|6|A|65
4U52|1|6|U|66
4U52|1|6|A|67
4U52|1|6|A|68
4U52|1|6|G|69
4U52|1|6|C|70
*
4U52|1|6|G|81
4U52|1|6|U|82
4U52|1|6|G|83
4U52|1|6|A|84
4U52|1|6|A|85
4U52|1|6|A|86
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d4
- 40S ribosomal protein S24-A
- Chain n4
- 60S ribosomal protein L24-A
- Chain s6
- 40S ribosomal protein S6-A
Coloring options: