IL_4U52_498
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 4U52|1|6|C|1274, 4U52|1|6|U|1432, 4U52|1|6|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U52_498 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.0795
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4U52|1|6|U|1272
4U52|1|6|G|1273
4U52|1|6|C|1274
4U52|1|6|A|1275
4U52|1|6|U|1276
4U52|1|6|G|1277
4U52|1|6|G|1278
*
4U52|1|6|U|1430
4U52|1|6|C|1431
4U52|1|6|U|1432
4U52|1|6|G|1433
4U52|1|6|U|1434
4U52|1|6|G|1435
4U52|1|6|A|1436
4U52|1|6|U|1437
4U52|1|6|G|1438
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c0
- 40S ribosomal protein S10-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain e1
- Ubiquitin-40S ribosomal protein S31
- Chain s3
- 40S ribosomal protein S3
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