IL_4U53_151

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

4U53|1|2|U|313, 4U53|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U53_151 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0802

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

4U53|1|2|U|311
4U53|1|2|A|312
4U53|1|2|U|313
4U53|1|2|C|314
4U53|1|2|A|315
4U53|1|2|A|316
*
4U53|1|2|U|348
4U53|1|2|U|349
4U53|1|2|U|350
4U53|1|2|C|351
4U53|1|2|A|352
4U53|1|2|A|353
4U53|1|2|C|354
4U53|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain D3

40S ribosomal protein S23-A

Chain S8

40S ribosomal protein S8-A