IL_4U53_386
3D structure
- PDB id
- 4U53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAAUC*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 4U53|1|6|G|459
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U53_386 not in the Motif Atlas
- Homologous match to IL_4V88_408
- Geometric discrepancy: 0.0646
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4U53|1|6|C|443
4U53|1|6|C|444
4U53|1|6|A|445
4U53|1|6|A|446
4U53|1|6|U|447
4U53|1|6|C|448
*
4U53|1|6|G|458
4U53|1|6|G|459
4U53|1|6|A|460
4U53|1|6|G|461
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d4
- 40S ribosomal protein S24-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s9
- 40S ribosomal protein S9-A
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