IL_4U55_131

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

4U55|1|1|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U55_131 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.0635

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4U55|1|1|G|3328
4U55|1|1|U|3329
4U55|1|1|A|3330
*
4U55|1|1|U|3373
4U55|1|1|U|3374
4U55|1|1|A|3375
4U55|1|1|A|3376
4U55|1|1|G|3377
4U55|1|1|C|3378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain N4

60S ribosomal protein L24-A

Chain O1

60S ribosomal protein L31-A