IL_4U55_475

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U55_475 not in the Motif Atlas

Homologous match to IL_8P9A_421

Geometric discrepancy: 0.1075

The information below is about IL_8P9A_421

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4U55|1|2|G|885
4U55|1|2|U|886
4U55|1|2|A|887
4U55|1|2|U|888
*
4U55|1|2|A|924
4U55|1|2|G|925
4U55|1|2|A|926
4U55|1|2|C|927

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C4

40S ribosomal protein S14-A

Chain D6

40S ribosomal protein S26-B

Chain L2

60S ribosomal protein L2-A

Chain Q3

60S ribosomal protein L43-A

Chain S1

40S ribosomal protein S1-A