IL_4U67_048

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

4U67|1|X|U|1601, 4U67|1|X|G|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_048 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.2973

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4U67|1|X|U|1426
4U67|1|X|G|1427
4U67|1|X|G|1428
4U67|1|X|A|1429
4U67|1|X|G|1430
*
4U67|1|X|C|1598
4U67|1|X|G|1599
4U67|1|X|U|1600
4U67|1|X|U|1601
4U67|1|X|G|1602
4U67|1|X|A|1603
4U67|1|X|A|1604
4U67|1|X|A|1605

Current chains

Chain X

23s RNA

Nearby chains