IL_4U67_062
3D structure
- PDB id
- 4U67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- UGCCAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 4U67|1|X|C|1792, 4U67|1|X|C|1808, 4U67|1|X|U|1812
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U67_062 not in the Motif Atlas
- Homologous match to IL_5J7L_313
- Geometric discrepancy: 0.1022
- The information below is about IL_5J7L_313
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4U67|1|X|U|1789
4U67|1|X|G|1790
4U67|1|X|C|1791
4U67|1|X|C|1792
4U67|1|X|A|1793
4U67|1|X|A|1794
4U67|1|X|C|1795
*
4U67|1|X|G|1805
4U67|1|X|G|1806
4U67|1|X|A|1807
4U67|1|X|C|1808
4U67|1|X|G|1809
4U67|1|X|U|1810
4U67|1|X|A|1811
4U67|1|X|U|1812
4U67|1|X|A|1813
Current chains
- Chain X
- 23s RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
Coloring options: