IL_4UG0_009
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCGC*GCGCG
- Length
- 9 nucleotides
- Bulged bases
- 4UG0|1|L5|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UG0_009 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.27
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
4UG0|1|L5|C|125
4UG0|1|L5|C|126
4UG0|1|L5|G|127
4UG0|1|L5|C|128
*
4UG0|1|L5|G|140
4UG0|1|L5|C|141
4UG0|1|L5|G|142
4UG0|1|L5|C|143
4UG0|1|L5|G|144
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LG
- 60S RIBOSOMAL PROTEIN L7A
- Chain LN
- 60S RIBOSOMAL PROTEIN L15
- Chain LX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Lh
- 60S RIBOSOMAL PROTEIN L35
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