IL_4UG0_019

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGG*CCGCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_019 not in the Motif Atlas

Homologous match to IL_8C3A_018

Geometric discrepancy: 0.5192

The information below is about IL_8C3A_018

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4UG0|1|L5|C|459
4UG0|1|L5|C|460
4UG0|1|L5|G|461
4UG0|1|L5|G|462
*
4UG0|1|L5|C|693
4UG0|1|L5|C|694
4UG0|1|L5|G|695
4UG0|1|L5|C|696
4UG0|1|L5|G|697

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S RIBOSOMAL PROTEIN L6

Chain Lr

60S RIBOSOMAL PROTEIN L28