IL_4UG0_025
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCGGAU*ACCGU
- Length
- 11 nucleotides
- Bulged bases
- 4UG0|1|L5|A|509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UG0_025 not in the Motif Atlas
- Geometric match to IL_8VM9_004
- Geometric discrepancy: 0.397
- The information below is about IL_8VM9_004
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
4UG0|1|L5|G|505
4UG0|1|L5|C|506
4UG0|1|L5|G|507
4UG0|1|L5|G|508
4UG0|1|L5|A|509
4UG0|1|L5|U|510
*
4UG0|1|L5|A|649
4UG0|1|L5|C|650
4UG0|1|L5|C|651
4UG0|1|L5|G|652
4UG0|1|L5|U|653
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S RIBOSOMAL PROTEIN L4
- Chain LL
- 60S RIBOSOMAL PROTEIN L13
- Chain LQ
- 60S RIBOSOMAL PROTEIN L18
- Chain La
- 60S RIBOSOMAL PROTEIN L27A
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