IL_4UG0_048

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_048 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.1185

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4UG0|1|L5|C|1551
4UG0|1|L5|G|1552
4UG0|1|L5|A|1553
4UG0|1|L5|A|1554
4UG0|1|L5|G|1555
*
4UG0|1|L5|U|1572
4UG0|1|L5|G|1573
4UG0|1|L5|G|1574
4UG0|1|L5|A|1575
4UG0|1|L5|G|1576

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S RIBOSOMAL PROTEIN L8

Chain LR

60S RIBOSOMAL PROTEIN L19

Chain Lp

60S RIBOSOMAL PROTEIN L37A