IL_4UG0_090

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

4UG0|1|L5|A|3663, 4UG0|1|L5|U|3679, 4UG0|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_090 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1149

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4UG0|1|L5|C|3660
4UG0|1|L5|G|3661
4UG0|1|L5|A|3662
4UG0|1|L5|A|3663
4UG0|1|L5|G|3664
4UG0|1|L5|G|3665
*
4UG0|1|L5|U|3677
4UG0|1|L5|G|3678
4UG0|1|L5|U|3679
4UG0|1|L5|U|3680
4UG0|1|L5|G|3681
4UG0|1|L5|A|3682
4UG0|1|L5|C|3683
4UG0|1|L5|G|3684

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S RIBOSOMAL PROTEIN L8

Chain Lp

60S RIBOSOMAL PROTEIN L37A

Chain S2

Small subunit ribosomal RNA; SSU rRNA