IL_4UG0_096

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

4UG0|1|L5|A|3785, 4UG0|1|L5|C|3791, 4UG0|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_096 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1782

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4UG0|1|L5|C|3781
4UG0|1|L5|C|3782
4UG0|1|L5|A|3783
4UG0|1|L5|A|3784
4UG0|1|L5|A|3785
4UG0|1|L5|U|3786
4UG0|1|L5|G|3787
4UG0|1|L5|C|3788
4UG0|1|L5|C|3789
4UG0|1|L5|U|3790
4UG0|1|L5|C|3791
4UG0|1|L5|G|3792
*
4UG0|1|L5|C|3808
4UG0|1|L5|G|3809
4UG0|1|L5|C|3810
4UG0|1|L5|G|3811

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S RIBOSOMAL PROTEIN L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA