IL_4UG0_105

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_105 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2694

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4UG0|1|L5|C|4243
4UG0|1|L5|A|4244
4UG0|1|L5|G|4245
*
4UG0|1|L5|C|4263
4UG0|1|L5|G|4264
4UG0|1|L5|U|4265
4UG0|1|L5|G|4266
4UG0|1|L5|G|4267

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S RIBOSOMAL PROTEIN L5

Chain LJ

60S RIBOSOMAL PROTEIN L11

Chain LT

60S RIBOSOMAL PROTEIN L21